Skunkworks Help

Analysis View

Once a run is complete or a data set has been loaded, the Analysis View springs to life, showcasing the chromatogram, calibration table, and integration events for a thorough review.

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Chromatogram

Visual representation of chemical data over time.

chromatogram.png
  • Draw Baselines
    Toggle this feature to enable or disable drawing baselines beneath all detected peaks, helping you visualize your data more clearly.

  • Fill Peak Width
    Fill the area behind all identified peaks with color for better visibility. Enable or disable this feature as needed.

  • Fill Retention Times
    Control the display of retention time windows in the calibration table by filling the area behind them. Turn this feature on or off at your convenience.

  • Show Peak Labels
    Opt to display peak retention times and names by enabling or disabling this option, keeping your view clean or informative.

  • Multi Signal Select
    Dive deeper! Open a dedicated screen to select signals to overlay or view separately, providing flexibility in your analysis.

  • Save Image
    Preserve your current view as a .png or .pdf file for documentation or reporting purposes.

  • Info
    Access detailed method information from when the sample was collected, giving you context for your analysis.

  • Baseline Report
    Analyze the signal data over a specified time period, helping to identify trends and anomalies.

  • Left Arrow
    Shorten the viewable time axis for a more compact analysis view.

  • Right Arrow
    Expand the viewable time axis to get a broader view of your data.

  • Up Arrow
    Zoom in on the y-axis to emphasize details in your signal data.

  • Down Arrow
    Compress the y-axis for a more condensed view of your results.

  • Detector Select
    View all signals for a detector that has multiple signal outputs (like MSD) to ensure you’re capturing all relevant data.

  • Signal Select
    Easily switch between available signals or focus on one of interest to streamline your analysis process.

  • Manual Integration Add Peak
    Enter manual integration mode to add a new peak to your dataset. Simply click on the chromatogram to define the bounds.

  • Manual Integration Edit Peak
    Modify an existing peak by clicking on it and selecting new bounds, ensuring your data remains accurate.

  • Manual Integration Remove Peak
    Delete a peak in 'Edit Peak' mode to keep your dataset tidy.

  • Manual Integration Cancel
    Exit manual integration mode without saving changes if you decide to rethink your adjustments.

  • Pointer
    Track the current (x,y) position of your mouse while hovering over the chromatogram, helping you pinpoint specific data points.

  • Area
    Display the area of a selected peak, but note that peaks can only be selected when viewing a single signal for precise analysis.

Run Info

Discover the method settings used during the sample collection, providing essential background for your results.

run_info.png

Baseline Report

Conduct an analysis of the signal at a specified time, perfect for scrutinizing performance.

baseline_report.png

Multi Signal Select

Choose any combination of signals to overlay or view individually, enhancing your comparative analysis.

multi_signal_select.png
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  • Draw Baselines
    Enable or disable the drawing of baselines under peaks for clarity.

  • Fill Peak Width
    Adjust the fill for peaks to highlight their significance visually.

  • Fill Retention Times
    Control the visual representation of retention times in your calibration table.

  • Show Peak Labels
    Opt to display or hide retention times and peak names based on your preference.

  • Save Image
    Keep a record of your analysis by saving the current view as a .png or .pdf file.

MSD Abundance Ratio

For datasets with MSD enabled, simply double-click anywhere on the chromatogram to reveal the abundance ratio at that precise moment, adding depth to your analysis.

msd_abundance_ratio.png
Last modified: 12 May 2026